Editing Earth: Final Conflict (section)

===Season 2===
Beckett gives birth as the Resistance is saddened by the news that Boone has died. The protector's baby is a Kimeran/human hybrid and grows at a rapid rate. He takes the name "Liam Kincaid" and immediately takes action as an adult. Beckett's memory is wiped and she is sent back to the Taelons. The recovered fiancée is really a replicant of the mysterious probe, which is from another alien race known as the Jaridians. The probe replicant kills the leader of the Taelon Synod. Liam saves Da'an and is recruited to become his new protector. Liam joins the Resistance but doesn't get along with Doors. Lili is forced to work under Sandoval but continues her double agent duties. Zo'or becomes the new Taelon leader, with Sandoval becoming his personal protector.

Da'an realizes who and what Liam is but keeps his secret, and the two become good friends. Da'an and Zo'or battle over each other's ideologies. Zo'or believes humans should serve the Taelons, while Da'an thinks humanity is worthy of being their equals. The Taelons prepare Earth for war with the Jaridians, who believe humans have sided with the Taelons.

Augur's experiments accidentally sever Da’an's connection to the Commonality, causing him to revert to a primitive state the Taelons call an Atavus. Zo’or orders Da’an's death, claiming he is a threat to the Synod and that Da’an will never be able to rejoin the Commonality. Liam is able to reconnect Da’an to the Commonality, restoring his physical form.

Zo’or tries to destroy the Liberation by manipulating human brain waves, but a lucky trip through a time-portal gives Liam the hints he needs to prevent it.

An attempt by Doors to have Liam killed results in Liam and Augur being cast into a parallel dimension, where they see humanity without the influence of Ma’al. They return with Maya, who was Kayla's (Lili's) sister and Jason's (Sandoval's) wife in her dimension.

Augur is arrested in Russia and sentenced to death. A Taelon representative, Lazarus, recruits him for an experimental procedure to create super-soldiers.  Lazarus regains his memories, restores Augur's memories then attempts a coup on the Taelon mothership.

The Resistance finds out that the CVI's motivational imperative wears off after a time, leaving the protectors restored to their own wills. Liam senses that the CVI of his mother, long-serving Protector Siobhan Beckett, has malfunctioned and attempts to locate her. Beckett has to deal internally with all the wrongs she has committed while in an altered mental state. Also concerned, Zo'or sends Sandoval to locate Beckett, but Liam locates her first. He joins his dying mother and shares with her energetically/telepathically revealing his true origin. She realizes who he is as she passes away.

Doors decides to take the Resistance above ground and runs for president. The Resistance members are pardoned in a deal Doors is able to make.

Sandoval becomes intrigued by Maya, and begins a search for her. She begins to suffer from being in the wrong dimension. Her counterpart in this dimension, Isabel, is tracked down. Lili discovers Isabel is her half-sister from her father's secret life. Maya and Isabel are united so the two can merge and both survive in one body. The dead body is left for Sandoval to find, to discourage him from pursuing Maya/Isabel any more.

A Jaridian soldier escapes from the Taelon mothership, taking Lili hostage. Liam pursues them through inter-dimensional space, and the three are stranded on a Kimera station. After navigating their way to the heart of the station, Liam lets the Jaridian go and reports his demise on the station to Sandoval and Zo'or.

Chandler and his stolen shuttle reappear to attempt an attack on a Taelon embassy.

Teens are being recruited to become front line soldiers in the Taelon war. Da’an recalls the soldiers after threatening to betray Zo’or's plans to the humans.

Former Resistance members come to Lili and Augur concerned over humanity's protection. The Resistance is reformed under Liam's leadership. Da'an warns Liam that reforming the Resistance is a bad idea, but decides not to betray them to the Synod.

A Taelon crashes on Earth, claiming to be sympathetic to the humans. He claims the entire plan the Taelons have for humanity was conceived by Da’an.

Augur is hired to help complete a weapon called the Forge to use against the Jaridians. Liam and Da’an disagree about the weapon.

A Jaridian probe crashes on Earth after taking a partial hit from the Taelons. The resistance finds it, but are captured before they begin to examine it. After finding a black ops group that is also preparing to survive whatever the Taelons may bring, they cooperate to examine the probe, and discover it is a message probe with plans for an advanced communications device, with an offer from the Jaridians to cooperate to defeat the Taelons.

Zo'or sets the Resistance and Doors up when he has an assassination attempt made on President Thompson. Thompson survives and declares [[martial law]]. The Resistance members are targeted and many are brought to the Taelon Mothership. Liam and Augur try to rescue Doors but are pinned down. Lili tries to destroy the mothership in a last-ditch effort to save Earth.