Editing Domestication (section)

=== Impact on plant microbiome ===

The [[microbiome]], the collection of [[microorganism]]s inhabiting the surface and internal tissue of plants, is affected by domestication. This includes changes in microbial species composition<ref>{{Cite journal |last1=Mutch |first1=Lesley A. |last2=Young |first2=J. Peter W. |date=2004 |title=Diversity and specificity of ''Rhizobium leguminosarum'' biovar ''viciae'' on wild and cultivated legumes |url=https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-294X.2004.02259.x |journal=Molecular Ecology |volume=13 |issue=8 |pages=2435–2444 |doi=10.1111/j.1365-294X.2004.02259.x |pmid=15245415 |bibcode=2004MolEc..13.2435M |s2cid=1123490}}</ref><ref>{{Cite journal |last1=Kiers |first1=E. Toby |last2=Hutton |first2=Mark G. |last3=Denison |first3=R. Ford |date=December 22, 2007 |title=Human selection and the relaxation of legume defences against ineffective rhizobia |journal=Proceedings of the Royal Society B: Biological Sciences |volume=274 |issue=1629 |pages=3119–3126 |doi=10.1098/rspb.2007.1187 |pmc=2293947 |pmid=17939985}}</ref><ref name=":4">{{Cite journal |last1=Abdelfattah |first1=Ahmed |last2=Tack |first2=Ayco J. M. |last3=Wasserman |first3=Birgit |last4=Liu |first4=Jia |last5=Berg |first5=Gabriele |last6=Norelli |first6=John |last7=Droby |first7=Samir |last8=Wisniewski |first8=Michael |display-authors=5 |title=Evidence for host–microbiome co-evolution in apple |journal=New Phytologist |date=2021 |volume=234 |issue=6 |pages=2088–2100 |doi=10.1111/nph.17820 |pmid=34823272 |pmc=9299473 |s2cid=244661193}}</ref> and diversity.<ref>{{Cite journal |last1=Coleman-Derr |first1=Devin |last2=Desgarennes |first2=Damaris |last3=Fonseca-Garcia |first3=Citlali |last4=Gross |first4=Stephen |last5=Clingenpeel |first5=Scott |last6=Woyke |first6=Tanja |last7=North |first7=Gretchen |last8=Visel |first8=Axel |last9=Partida-Martinez |first9=Laila P. |last10=Tringe |first10=Susannah G. |display-authors=5 |date=2016 |title=Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species |journal=New Phytologist |volume=209 |issue=2 |pages=798–811 |doi=10.1111/nph.13697 |pmc=5057366 |pmid=26467257|bibcode=2016NewPh.209..798C }}</ref><ref name=":4" /> Plant lineage, including [[speciation]], domestication, and [[Plant breeding|breeding]], have shaped plant [[endophyte]]s ([[phylosymbiosis]]) in similar patterns as plant genes.<ref name=":4" /><ref>{{Cite journal |last1=Bouffaud |first1=Marie-Lara |last2=Poirier |first2=Marie-Andrée |last3=Muller |first3=Daniel |last4=Moënne-Loccoz |first4=Yvan |display-authors=3 |date=2014 |title=Root microbiome relates to plant host evolution in maize and other Poaceae |url=https://onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.12442 |journal=Environmental Microbiology |volume=16 |issue=9 |pages=2804–2814 |doi=10.1111/1462-2920.12442 |pmid=24588973 |bibcode=2014EnvMi..16.2804B}}</ref><ref>{{Cite journal |last1=Abdullaeva |first1=Yulduzkhon |last2=Ambika Manirajan |first2=Binoy |last3=Honermeier |first3=Bernd |last4=Schnell |first4=Sylvia |last5=Cardinale |first5=Massimiliano |display-authors=3 |date=July 1, 2021 |title=Domestication affects the composition, diversity, and co-occurrence of the cereal seed microbiota |journal=Journal of Advanced Research |volume=31 |pages=75–86 |pmid=34194833 |doi=10.1016/j.jare.2020.12.008 |pmc=8240117}}</ref><ref>{{Cite journal |last1=Favela |first1=Alonso |last2=O. Bohn |first2=Martin |last3=D. Kent |first3=Angela |date=August 2021 |title=Maize germplasm chronosequence shows crop breeding history impacts recruitment of the rhizosphere microbiome |journal=[[The ISME Journal]] |volume=15 |issue=8 |pages=2454–2464 |doi=10.1038/s41396-021-00923-z |pmid=33692487 |pmc=8319409|bibcode=2021ISMEJ..15.2454F }}</ref>